*** For details on how to be removed from this list visit the ***
*** CCP4 home page http://www.ccp4.ac.uk ***
Hi,
You can use Moleman.
>moleman2
>re pdb file
>SQ LI
This will list out the sequence in 1 letter code which you can then
copy/paste.
Debanu.
--
Debanu Das, Ph.D.,
Postdoctoral Scientist,
University of California,
Berkeley, CA 94720.
Bottomley, Matthew wrote:
*** For details on how to be removed from this list visit the ***
*** CCP4 home page http://www.ccp4.ac.uk ***
Hello,
could anyone tell me how to get the single-letter amino acid sequence out of
a PDB file, e.g. in fasta format?
I would like to do this so that I can compare it with the 'expected'
sequence, since e.g. arp/warp sometimes puts an Ala when there is a Lys with
poor side-chain density....
Thanks.
Matt
------------------------------------------------------------------------------
Notice: This e-mail message, together with any attachments, contains
information of Merck & Co., Inc. (One Merck Drive, Whitehouse Station,
New Jersey, USA 08889), and/or its affiliates (which may be known
outside the United States as Merck Frosst, Merck Sharp & Dohme or MSD
and in Japan, as Banyu - direct contact information for affiliates is
available at http://www.merck.com/contact/contacts.html) that may be
confidential, proprietary copyrighted and/or legally privileged. It is
intended solely for the use of the individual or entity named on this
message. If you are not the intended recipient, and have received this
message in error, please notify us immediately by reply e-mail and then
delete it from your system.
------------------------------------------------------------------------------
