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-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Hi Bernhard, You can use chimera (http://www.cgl.ucsf.edu/chimera/) for that. Open your pdb, go to: Tools->Surface/Binding Analysis->Surface/Area Analysis it will open a dialog window. In the "Chains" tab select the model/chain you are interested in. In the "Compute" button you can select betweeen accessible, msms, or Voronoi surfaces. Mark either "Save server output to file" or "Show server output in browser". In either case, you will be given a list of atoms (their lines in your coordinates file plus two more columns) from which you can easily parse the B-factors and compute that average. Cheers, Miguel Bernhard Rupp wrote: > *** For details on how to be removed from this list visit the *** > *** CCP4 home page http://www.ccp4.ac.uk *** > > > Dear All, > > I am trying to find a program/script/procedure that allows me to > get an average B of the surface exposed residues. > Grateful for suggestions. > Thx, br > -------------------------------------------- > Bernhard Rupp, FRS > www.ruppweb.org > -------------------------------------------- > > > - -- Miguel Ortiz Lombardía Centro de Investigaciones Oncológicas C/ Melchor Fernández Almagro, 3 28029 Madrid, Spain Tel. +34 912 246 900 Fax. +34 912 246 976 email: [EMAIL PROTECTED] www: http://www.ysbl.york.ac.uk/~mol/ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Le travail est ce que l'homme a trouvé de mieux pour ne rien faire de sa vie. (Raoul Vaneigem) -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.1 (GNU/Linux) iD8DBQFFLJCRF6oOrDvhbQIRAoOZAJ9nLFieS/ek7nkOlXuNSxIgBijCgQCgiAwb RsXiYdThjNELYkm+M5/3GZQ= =79ka -----END PGP SIGNATURE-----
