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Hi Shivesh, sorry this is doesn't relate to pymol. but you can easily get a nice pic for your publication with your molecule and the associated e.d. in xtalview. what i do is save a pdb file for only the atoms i want in the picture, display that pdb file and the e.den. for that molecule and use the "blob" option to display the density around those atoms. and you can adjust some parameters to get what you'd like to see. you can then use imagemagick (think this is the default option in xtalview) or alternatively save the figure and use render command to write out a .png file. altho' png file is not as good as tiff , you can fire up photoshop or gimp and save as tiff. but i think you can use these png files directly into your presentations as they aren't as big as tiff and of decent quality for presentations. but you probably need the tiff files made out from high res (say 300 dpi) for publications good luck Sid On 10/14/06, shivesh kumar <[EMAIL PROTECTED]> wrote:
Dear all, I am trying to make good electron density picture in pymol for publication.The problem is that I am unable to remove the extra electron density of the symmetry related molecule which is coming along with the region which I have chosen even at low sigma(1).What should I do???thanx... Shivesh
-- -Sid Sudharsan Sridharan Dept. of Biochemistry Cambridge University 80 Tennis Court Road Cambridge CB2 1GA UK. Ph: +44-01223-766028
