http://www.gnu.org/software/automake/
What are the reasons Coot doesn't use this type of build system? Portability?
Coot's myriad dependencies mean that compiling isn't an option for most users. Automake (or a similar build system) could be very useful in this regard.
Mark
On 27/10/06, Clemens Vonrhein <[EMAIL PROTECTED]> wrote:
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The absolute easiest option would be if Paul could compile Coot as a
static binary ... well, easiest for us users because it puts the
burdon onto poor Paul ;-)
It might be possible to get rid of most shared libraries, but I'm not
sure it would work for 100%. But glibc should be doable:
% g++ -static -static-libgcc
does it for us.
Cheers
Clemens
On Fri, Oct 27, 2006 at 05:14:47PM +0200, Tim Gruene wrote:
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> *** CCP4 home page http://www.ccp4.ac.uk ***
>
>
> glibc is a very basic library. I dare say, the easiest option would be to
> update your system. The second easiest would be to compile coot yourself.
> well, it is second because I do not see another option ;-)
>
> Tim
>
> --
> Tim Gruene
> Institut fuer anorganische Chemie
> Tammannstr. 4
> D-37077 Goettingen
>
> GPG Key ID = A46BEE1A
>
>
> On Fri, 27 Oct 2006, D. Eric Dollins wrote:
>
> >*** For details on how to be removed from this list visit the ***
> >*** CCP4 home page http://www.ccp4.ac.uk ***
> >
> >
> >Paul,
> >You're right about the version of coot I was using when getting the
> >NCS problems. I was using 0.1.1. Now I'm onto the next problem. I
> >went to download version 0.1.3. After installation, I get library
> >errors. The errors look something like this:
> >
> >/usr/local/coot/Linux-bubbles-pre-release/bin/coot-real:
> >/lib/i686/libpthread.so.0: version `GLIBC_2.3.2' not found (required
> >by /usr/local/coot/Linux-bubbles-pre-release/bin/coot-real).........there
> >were some more errors looking for /usr/lib/libGL.so.1.
> >
> >I am running an admittingly old version of Linux redhat 8.0. How can
> >I get around this dependency issue? I looks through RPMfind.net and
> >couldn't find any GLIBC_2.3.2 for redhat 8.0. Any idead how to get
> >around those errors?
> >
> >Cheers,
> >Eric
> >
> >
> >
> >
> >On 10/27/06, Paul Emsley < [EMAIL PROTECTED]> wrote:
> >>On Wed, 2006-10-25 at 16:45 -0400, D. Eric Dollins wrote:
> >>> *** For details on how to be removed from this list visit the ***
> >>> *** CCP4 home page http://www.ccp4.ac.uk ***
> >>>
> >>>
> >>> Hello all,
> >>> I wondered if anyone can help with a NCS problem in coot. I have a
> >>> 3.2A structure with 5 homodimers (10 chains) in the ASU. Given the
> >>> resolution, there are 10 chains for NCS. Obviously, I am disinterested
> >>> in refining all of them. I've tried using NCS in coot, however, when I
> >>> try to apply the edits from my master chain (which I changed from
> >>> chain "A" to the chain with the best density- happens to be "G"), coot
> >>> only applies changes to some of the chains. Not only that, but the
> >>> chains which the changes are applied to also seems to be random.
> >>
> >>There indeed was an error in applying NCS edits to other chains. I
> >>thought that I'd fixed that for 0.1.2. Which version are you running?
> >>
> >>> I've
> >>> gone through this several times now and the changes have been applied
> >>> to different chains each time. When I load in the model, coot does
> >>> find NCS for all chains A-J.
> >>
> >>> I wonder if this might be a buffer issue given the ridiculous size of
> >>> my ASU (>0.5 Megadalton)?
> >>
> >>That's not it, I'd guess.
> >>
> >>> I noticed also that coot can use a set of strict NCS matrices. Is
> >>> this similar to CNS where you reduce your number of molecules, in my
> >>> case, from 10 to 1. If so, how do you re-apply the matrices to
> >>> re-constiture the full ASU for a run in refmac?
> >>
> >>There is no straightforward way in coot to do this. You can mess with
> >>copy-molecule and applying an R/T op to each copy, then merge molecules
> >>(I've not tried to do that). Using pdbset to generate the other
> >>molecules? You'd need to then "concat and edit" the resulting pdb files
> >>- bleugh.
> >>
> >>Paul.
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >
> >
> >--
> >D. Eric Dollins
> >C266 LSRC, Box 3813
> >Duke University Medical Center
> >Durham, NC 27710
> >(919)681-1668
> >
>
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