SHELXL pdb formats is not the official PDB one in some aspects.
I usually try
pdbset xyzin shelx.pdb xyzout shelx2.pdb

This does some modifications, but you may well still have to edit bits by hand.

Can you send part of your problem file to me - I could use it to test the program and maybe make it more effective.

 Eleanor


[EMAIL PROTECTED] wrote:

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Hi,
Is a pdb file output from shelxl with alternate conformations for some of
the residues readable in CCP4?
The error at the end of the log file when I use the coordconv from shelx
to pdb is

The program run with command: coordconv XYZIN
/home/artis/h2ase/FE_C_ref/ideal_hc/cnc_vs_ccc/center_O/ce_o_ono.pdb
XYZOUT
/home/artis/h2ase/FE_C_ref/ideal_hc/cnc_vs_ccc/center_O/ce_o2_ccp4.pdb
has failed with error message
fmt: read unexpected character
apparent state: internal I/O
last format: (A4,I3,3F8.4,F10.6,F6.2)
lately reading sequential formatted internal IO
Thanks for any help.
Arti Pandey
Montana State University








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