Thanks you all.
I have used CNS or CCP4 calculated the contacts.
Next I will confirm them individually if they are in van der Waals radius.
Thanks
On 1/16/07, Geoffrey Kwai Wai Kong <[EMAIL PROTECTED]> wrote:
>
> If you have a specific region to look for, you can try with the CCP4
> program CONTACT. The only problem is that the program lists its output
> based on individual atoms instead of whole residues or side chains. So
> you will have to look through the list carefully; if the atoms of one
> residue is consistently in vdW distance of atoms of another residue,
> then you may say that the two residues are in vdW contact. See the
> manual to this program for more information.
>
> I understand that it is not the best approach if the region you are
> looking for is large, but I hope that helps.
>
> Geoffrey Kong
>
--
Jiamu Du
Key Laboratory of Proteomics
Institute of Biochemistry and Cell Biology Shanghai Institutes for
Biological Sciences
Chinese Academy of Sciences (CAS)
--
Jiamu Du
Key Laboratory of Proteomics
Institute of Biochemistry and Cell Biology Shanghai Institutes for
Biological Sciences
Chinese Academy of Sciences (CAS)
