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This perl snippet tells you where the gaps are. (It's a bit rough at the
edges and ignores chain-id).
#!/usr/bin/perl
$n=0;
while(<>){
if(($_=~/^ATOM/)||($_=~/^HETATM/)){
$m=substr($_,22,4);
unless(($n==$m)||($n==$m-1)){
print "$n .. $m\n";
};
$n=$m;
}
};
print "$m ..\n";
Cheers,
Charlie
--
Charlie Bond
Professorial Fellow
University of Western Australia
School of Biomedical, Biomolecular and Chemical Sciences
M310
35 Stirling Highway
Crawley WA 6009
Australia
[EMAIL PROTECTED]
+61 8 6488 4406
