I found this question interesting, therefore I quickly searched the entire PDB V3 (http://wwpdb-remediation.rutgers.edu/) for LINK records linking two standard amino acid residues, excluding chain links and same-chain disulfides. Here are the results:
http://cci.lbl.gov/~rwgk/tmp/protein_protein_links/2007_02_26_1220/file_names_protein_protein_links http://cci.lbl.gov/~rwgk/tmp/protein_protein_links/2007_02_26_1220/protein_protein_links In the second file, look for "protein_protein_links" to find the LINK records. At first sight there are only a few false positives (residue linked to itself), which I didn't filter out because I want to tell the wwPDB about it. Let me know if you find more false positives. Ralf ----- Original Message ---- From: Lionel Mourey <[EMAIL PROTECTED]> To: [email protected] Sent: Monday, February 26, 2007 7:28:43 AM Subject: [ccp4bb] References for 3D structures of covalent complexes Dear all, I would be very interested and much grateful having references (bibliographic data, PDB entry code, web link...) on 3D structures of covalently linked (engineered or not) protein-protein complexes (e.g. heterodimers). Our own survey of the literature was not very "successful". Thanks for your help. Lionel ____________________________________________________________________________________ Looking for earth-friendly autos? Browse Top Cars by "Green Rating" at Yahoo! Autos' Green Center. http://autos.yahoo.com/green_center/
