Hi,
You are almost certainly not using phaser that came with ccp4, but some
other version, e.g. phenix. From the window you start ccp4i from, type
'which phaser'. It should say '/your/path/to/ccp4-6.0.2/bin/phaser', but
it will say something different in your case (e.g.
'/your/path/to/phenix/bin/phaser'). Make sure your path variable has CBIN
before the path of the other phenix-path, or rename the phenix-version if
you do not use it.
Probably the best way would be to start up ccp4i from a script that
sources the ccp4i environment first and then starts ccp4i - that way your
environment settings do not affect the other programs (would that be a
suggestion to the ccp4-developers?)
so create a script saying something like
#!/bin/sh
source /your/path/to/ccp4-6.0.2/include/ccp4.setup
exec ccp4i
and make sure ccp4.setup puts CBIN first in the PATH variable.
Cheers, Tim
--
Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
On Tue, 27 Mar 2007, yang li wrote:
Hi,
Anyone has used phser in ccp46.0.2 which is automatically installed with
ccp4? In previous ccp4 edition
I installed phaser seperately and it worked well, but now it seems has some
problems, it cannot read the
input mtz file, I tried several data, all gave the same error information
like below:
*************************************************************************************
*** Phaser Module: READ DATA FROM MTZ
FILE 2.0 ***
*************************************************************************************
<B><FONT COLOR="#FF8800">
-----------------------------------------------
FILE OPENING ERROR: "/root/work/1she/1she.mtz"
-----------------------------------------------
</FONT></B>
--------------------
EXIT STATUS: FAILURE
--------------------
I donnot think all these data are bad, and these data can be read in other
mr programs.
I wonder if I should install phaser again? The phaser install package for
CCP4-5.0 still can be used in this edition?
Thanks!
