I use PISA - it tells you lots of things and I think will do this as well
http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html
You can download your coordinates.. Will need to name subunits A and B
or something I think..
Eleanor
Gloria Borgstahl wrote:
Hello all,
What is the easiest way, these days, to calculate the buried surface area
between two subunits of a protein?
Thanks, and Happy Friday, Gloria
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Gloria Borgstahl
Eppley Institute for Cancer Research and Allied Diseases
987696 Nebraska Medical Center
10732A Lied Transplant Center
Omaha, NE 68198-7696
http://sbl.unmc.edu
Office (402) 559-8578
FAX (402) 559-3739
Associate Professor
Interests: Cancer, Biochemistry, DNA Metabolism, Protein Crystallography,
Modulated Crystals, Crystal Perfection, X-ray Topography,
Varley, Rowling, Avatar, BRAN, RAGBRAI, swimming & soccer
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