Hi Yang Li Are you sure it's not just a file permission problem? If the Apache account does not have read access to /home/prog then even if you make a local copy of ccp4.setup so Apache can read it, the script will report that the directory /home/prog/ccp4/ does not exist. In fact if Apache doesn't have read access (as you say) to $CINCL/ccp4.setup then presumably it doesn't have read access to the other ccp4 files either, in which case how is the Apache account supposed to run ccp4 programs?
HTH! -- Ian > -----Original Message----- > From: [EMAIL PROTECTED] > [mailto:[EMAIL PROTECTED] On Behalf Of yang li > Sent: 21 May 2007 10:23 > To: [email protected] > Subject: How to run ccp4 in php script? > > Hi All, > I have some scripts which need to use some > programs--like cad, refmac--in ccp4, and I want to > use a php script to run these scripts, with command as : > $cmd =" sh aa.inp"; system($cmd); > As I know, when I use php script, the account is Apache, > which is a nologin account, all the files I used > are put in the directory which belong to Apache.I donnot know > what shell it uses, assume it uses bash, > since Apache has no permission to /ccp4/include/ccp4.setup, I > copied ccp4.setup to the directory I used. > And add a line in the script to source this ccp4.setup, file, > but it gives such error information: > ********************* WARNING ********************** The > directory /home/prog/ccp4 (assigned to CCP4_MASTER) does not > exist. The CCP4 programs will not run correctly, and any > installation attempt will have errors or will fail. > ********************* WARNING ********************** > I donnot know how to solve this problem. Anyone knows how > to run the ccp4 programs with the php script? > > Thanks! > > Disclaimer This communication is confidential and may contain privileged information intended solely for the named addressee(s). It may not be used or disclosed except for the purpose for which it has been sent. If you are not the intended recipient you must not review, use, disclose, copy, distribute or take any action in reliance upon it. If you have received this communication in error, please notify Astex Therapeutics Ltd by emailing [EMAIL PROTECTED] and destroy all copies of the message and any attached documents. Astex Therapeutics Ltd monitors, controls and protects all its messaging traffic in compliance with its corporate email policy. The Company accepts no liability or responsibility for any onward transmission or use of emails and attachments having left the Astex Therapeutics domain. Unless expressly stated, opinions in this message are those of the individual sender and not of Astex Therapeutics Ltd. The recipient should check this email and any attachments for the presence of computer viruses. Astex Therapeutics Ltd accepts no liability for damage caused by any virus transmitted by this email. E-mail is susceptible to data corruption, interception, unauthorized amendment, and tampering, Astex Therapeutics Ltd only send and receive e-mails on the basis that the Company is not liable for any such alteration or any consequences thereof. Astex Therapeutics Ltd., Registered in England at 436 Cambridge Science Park, Cambridge CB4 0QA under number 3751674
