Fink shouldn't touch anything else.  If in doubt,

sudo mv /sw /sw.keep

and you have effectively hidden it.

Did you use my ubuntu coot debian, or os x stand-alone?

I may have made a mistake packaging these.  I never tried the fit protein
script (since none of my recent enzymes contained amino acids).

Youssef BEN AMMAR wrote:
> Dear all,
> I have installed the latest version of Coot on my Ubuntu computer, but
> surprisingly I couldn't run the script (fit-protein /imol/). Coot didn't
> execute that script.
> I returned back to the previous version installed on my iMac, but I had
> also the same problem, although this was working perfectly after
> installation two months ago.
> Does installation of fink disturb the standalone coot? or I am missing
> something important for running the script???
>
> regards,
>
> Youssef.
>

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