Hi Tim, Sorry, I forgot to mention that I had also tried that. But if you invoke the linker through 'gcc', then some options (notably -soname) are not recognized.
Yes, I was trying to build shared libraries. That gives me the idea that I could try not to do so, thanks! The problem is with gcc, anyway. I tried both g77 and gfortran. I know the issues about gfortran, I found one myself concerning molrep. However, I'm not sure whether the last version of refmac5 compiles with g77. Thank you! Miguel 2007/6/29, Tim Grune <[EMAIL PROTECTED]>:
Hi, according to this page (http://www.xastir.org/wiki/index.php/HowTo:Ubuntu_6.10) the problem arises due to a wrong ld option ('ld -shared' rather than 'gcc -shared'). How did you run configure ? Are you trying to build shared libraries? ccp4 works fine with Debian lenny, gcc-4.1.2 with just running FC=g77 F77=g77 ./configure linux (you should use g77 rather than gfortran. The programs compile but do not work properly, especially with mosflm in Harry Powell's experience). Tim On Thursday 28 June 2007 20:32, Miguel Ortiz-Lombardía wrote: > Dear all, > > Has anyone succeeded at compiling the latest release of CCP4 with gcc-4.1.2 > This is the compiler version in Ubuntu 7.04 (Feisty Fawn) > > At the very beginning (ccif lib compilation), I get this error: > > /usr/bin/ld: final link failed: Nonrepresentable section on output > > I looked around and found that: > > export CC="gcc -fno-stack-protector" > > might help. It did help, and the compilation proceeded... to the program > solomon, where I get again: > > eval gcc -fno-stack-protector ${pdbhtf_FLAGS-"-O -DGFORTRAN -DPROTOTYPE > -fPIC"} -o pdbhtf pdbhtf.o-Wl,-rpath,/home/miguel/Desktop/ccp4-build/ccp4- > 6.0.2/lib -lm && rm -f pdbhtf.o > /home/miguel/Desktop/ccp4-build/ccp4-6.0.2/src/solomon_/cmap_io.c: In > function 'WriteMap': > /home/miguel/Desktop/ccp4-build/ccp4-6.0.2/src/solomon_/cmap_io.c:356: > warning: passing arg 3 of 'mat4_to_symop' from incompatible pointer > /usr/bin/ld: solomon: hidden symbol `__stack_chk_fail_local' in > /usr/lib/libc_nonshared.a(stack_chk_fail_local.oS) is referenced by DSO > /usr/bin/ld: final link failed: Nonrepresentable section on output > > Any clues anyone? > Thanks a lot! > > > > Miguel -- Tim Grune Australian Synchrotron 800 Blackburn Road Clayton, VIC 3168 Australia
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