Hmmm - ccp4bb doesn't allow an attachement ... so script comes here:
---------------------- cut here ---------------------------
#!/bin/sh
[ $# -eq 0 ] && echo " ERROR: give some PDB identifier as argument"
type tkdiff >/dev/null 2>&1
[ $? -eq 0 ] && diff=tkdiff || diff=diff
for id in $@
do
id=`echo $id | tr '[A-Z]' '[a-z]'`
[ ! -f pdb${id}.ent.Z ] && \
wget
ftp://ftp.ebi.ac.uk/pub/databases/rcsb/pdb/data/structures/all/pdb/pdb${id}.ent.Z
[ ! -f pdb${id}.ent.gz ] && \
wget
ftp://ftp.ebi.ac.uk/pub/databases/rcsb/pdb-remediated/data/structures/all/pdb/pdb${id}.ent.gz
zcat pdb${id}.ent.Z > ${id}.v2.pdb
gunzip -c pdb${id}.ent.gz > ${id}.v3.pdb
echo "$diff ${id}.v2.pdb ${id}.v3.pdb Continue?"
read m
$diff ${id}.v2.pdb ${id}.v3.pdb
done
---------------------- cut here ---------------------------
--
***************************************************************
* Clemens Vonrhein, Ph.D. vonrhein AT GlobalPhasing DOT com
*
* Global Phasing Ltd.
* Sheraton House, Castle Park
* Cambridge CB3 0AX, UK
*--------------------------------------------------------------
* BUSTER Development Group (http://www.globalphasing.com)
***************************************************************
