Dear all,
I tried to run DM for NCS averaging (DM module in CCP4i 6.0.2 installed under Windows XP), but the running failed at different stages with various error message as listed below. I was told it could be an installation problem, but I don't know how to fix it. I am wondering if you have encountered such problems before. I am very thankful for any help and comments. Thanks in advance. Error Message 1: ********************************************************************************************************************* #CCP4I JOB_ID 69 #CCP4I SCRATCH C:/Ccp4Temp/ #CCP4I PID 772 </pre> <B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN--> <html> <!-- CCP4 HTML LOGFILE --> <hr> <!--SUMMARY_END--></FONT></B> <a name="dmdm"><h1>dm 2.1</h1></a> <B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN--> <pre> ############################################################### ############################################################### ############################################################### ### CCP4 6.0: dm version 6.0 : ## ############################################################### User: Chen Run date: 30/ 7/2007 Run time: 10:27:58 Please reference: Collaborative Computational Project, Number 4. 1994. "The CCP4 Suite: Programs for Protein Crystallography". Acta Cryst. D50, 760-763. as well as any specific reference in the program write-up. <!--SUMMARY_END--></FONT></B> </pre> <a href="http://www.yorvic.york.ac.uk/~cowtan/dm/refs.html";>dm reference:</a> <blockquote> K. Cowtan (1994), dm: An automated procedure for phase improvement by density modification. Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 31, p34-38. </blockquote><p> <a name="tocdm"><h2>Contents</h2></a> <ul> <li><a href="#commanddm">Command input</a> <li><a href="#commentsdm">Comments</a> <li><a href="#mtzindm">MTZ input</a> <li><a href="#datachkdm">Data Checking</a> <li><a href="#datascldm">Data Scaling</a> <li><a href="#solmskdm">Solvent Mask</a> <li><a href="#cyc0001dm">First Cycle</a> <li><a href="#dataoutdm">Output</a> </ul> <a name="commanddm"><h2>Command Input</h2></a> <pre> Data line--- <a href="C:\CCP4-Packages\ccp4-6.0.2\html/dm.html#mode">MODE </a> SOLV AVER Data line--- <a href="C:\CCP4-Packages\ccp4-6.0.2\html/dm.html#combine">COMBINE </a> PERT Data line--- <a href="C:\CCP4-Packages\ccp4-6.0.2\html/dm.html#ncsmask">NCSMASK </a> SIZE 10 Data line--- <a href="C:\CCP4-Packages\ccp4-6.0.2\html/dm.html#scheme">SCHEME </a> ALL Data line--- <a href="C:\CCP4-Packages\ccp4-6.0.2\html/dm.html#ncycle">NCYCLE </a> AUTO Data line--- <a href="C:\CCP4-Packages\ccp4-6.0.2\html/dm.html#solc">SOLCONT </a> 0.5 Data line--- <a href="C:\CCP4-Packages\ccp4-6.0.2\html/dm.html#average">AVERAGE </a> REFI *** Warning Invalid keyword *** Warning Invalid sub-keyword in position 2 *** Warning Invalid keyword *** Warning Invalid sub-keyword in position 2 *** Warning Invalid keyword *** Warning Invalid sub-keyword in position 2 *** Warning Invalid keyword *** Warning Invalid sub-keyword in position 2 *** Warning Invalid keyword *** Warning Invalid sub-keyword in position 2 *** Warning Invalid keyword *** Warning Invalid sub-keyword in position 2 *** Warning Invalid sub-keyword in position 3 *** Warning Invalid sub-keyword in position 4 *** Warning Invalid sub-keyword in position 5 *** Warning Invalid sub-keyword in position 6 *** Warning Invalid sub-keyword in position 7 *** Warning Invalid sub-keyword in position 8 *** Warning Invalid sub-keyword in position 9 Data line--- <a href="C:\CCP4-Packages\ccp4-6.0.2\html/dm.html#labout">LABOUT </a> FDM=FDM PHIDM=PHIDM FOMDM=FOMDM <B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN--> dm: Input error (see above) Times: User: 0.0s System: 0.0s Elapsed: 0:00 </pre> </html> <!--SUMMARY_END--></FONT></B> *************************************************************************** * Information from CCP4Interface script *************************************************************************** The program run with command: dm HKLIN "D:/xtalwork/DM21/delM_arpwarp/work1/7_solvent_refmac7.mtz" HKLOUT "D:/xtalwork/DM21/delM_arpwarp/work1/7_solvent_dm4.mtz" SOLOUT "D:/xtalwork/DM21/delM_arpwarp/work1/7_solvent_dm2.msk" NCSIN1 "D:/xtalwork/DM21/delM_arpwarp/work1/A.msk" VUOUT D:/xtalwork/DM21/delM_arpwarp/work1/delM_69_ncs.odat has failed with error message dm: Input error (see above) *************************************************************************** #CCP4I TERMINATION STATUS 0 " dm: Input error (see above)" #CCP4I TERMINATION TIME 30 Jul 2007 10:27:58 #CCP4I MESSAGE Task failed Error Message 2: +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ <a name="ncsmskdm"><h3>Initial Averaging Mask</h3></a> <B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN--> *************************************************************************** * Information from CCP4Interface script *************************************************************************** The program run with command: dm HKLIN "D:/xtalwork/DM21/delM_arpwarp/work1/7_solvent_refmac7.mtz" HKLOUT "D:/xtalwork/DM21/delM_arpwarp/work1/7_solvent_dm3.mtz" SOLOUT "D:/xtalwork/DM21/delM_arpwarp/work1/7_solvent_dm2.msk" NCSOUT "D:/xtalwork/tmp/delM_63_ncs.msk" has failed with error message forrtl: severe (157): Program Exception - access violation Image PC Routine Line Source ntdll.dll 7C911E58 Unknown Unknown Unknown ntdll.dll 7C910D5C Unknown Unknown Unknown dm.exe 004A8FFF Unknown Unknown Unknown *************************************************************************** #CCP4I TERMINATION STATUS 0 "forrtl: severe (157): Program Exception - access violation Image PC Routine Line Source ntdll.dll 7C911E58 Unknown Unknown Unknown ntdll.dll 7C910D5C Unknown Unknown Unknown dm.exe 004A8FFF Unknown Unknown Unknown" #CCP4I TERMINATION TIME 29 Jul 2007 21:34:02 #CCP4I TERMINATION OUTPUT_FILES D:/xtalwork/tmp/delM_63_ncs.msk TEMPORARY #CCP4I MESSAGE Task failed
