Well - PDBSET gives you the X Y and Z dimensions. ( pdbset xyzin thismol.pdb end
If you want to align the protein along its principal axes, I usually run the TABLING function of Amore. That takes a model, moves its CofM to the origin and aligns it in such a way.
Eleanor Vineet Gaur wrote:
Hi All is there any programme available that can calculate the parameters like length of longest and shortest axis passing through the center of mass of a protein mlecule thanx in advance vineet gaur
