Thanks a lot for Francesco, Ethan, and Jessica. Yes, it is ESPrit.
For unknown reasons, when I use keywords: "sequence + alignment +
tools" in google that server never showed up.
It is also worthy to look at the other servers suggested in the
reply given below:
Francesco
Charlie Bond has a really nice program called ALINE. He used to have
it on his website http://stein.bioch.dundee.ac.uk/~charlie/index.php? section=6
Alternatively, you can just e-mail him [EMAIL PROTECTED]
Ethan Merritt
I use TeXShade
<http://www.ctan.org/tex-archive/help/Catalogue/entries/texshade.html>
But it's a TeX package, not a web server.
Might you be thinking of <http://wavis.img.cas.cz/> ?
Jessica Lynn,
Espript can do exactly what you're asking, and if I figured it out, you'll be
able to easily. I bet it's what you used before. It's really powerful.
http://espript.ibcp.fr/ESPript/ESPript/
thanks a lot,
Ibrahim
At 05:22 PM 9/25/2007, you wrote:
Hi all,
I'm looking for a webserver that can take the alignment and
produce a nice figure with the alignment annotated with sec. structure on top,
and draw boxes around conserved residues. Long time ago I had
used a server doing exactly what I described; unfortunately, I lost
the information
of that server from my computer and the memory could not help to
find it in google. I'm sure there are many tools, but I'm
interested in an easy-to-use one.
Something to plugin the sequence/alignment and get a pretty
alignment figure.
I'd be appreciating if someone out there could point me to that
server or similar ones.
I looked at several tools available online in Expasy but none is
doing what I did before.
thanks in advance for your help.
Ibrahim
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Ibrahim M. Moustafa, Ph.D.
Biochemistry and Molecular Biology Dept.
201 Althouse Lab., University Park
Pennsylvania State University, PA16802
Tel. (814)863-8703
Fax. (814)865-7927
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----------------------------------------------------------------------------------------------------------
Ibrahim M. Moustafa, Ph.D.
Biochemistry and Molecular Biology Dept.
201 Althouse Lab., University Park
Pennsylvania State University, PA16802
Tel. (814)863-8703
Fax. (814)865-7927
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