Christoph Gille's program STRAP generates structure-based multiple
sequence alignment,
which can be combined with sequences for which no structure is
available.
http://www.charite.de/bioinf/strap/
Klaus
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Klaus Fütterer, Ph.D.
School of Biosciences P: +44-(0)-121-414 5895
University of Birmingham F: +44-(0)-121-414 5925
Edgbaston E: [EMAIL PROTECTED]
Birmingham, B15 2TT, UK W: www.biochemistry.bham.ac.uk/klaus/
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On 5 Dec 2007, at 05:03, david wu wrote:
Hi all，
I want to produce structure-based multiple sequence alignment of my
protein with five of its homologs on DALI server. However, when I
tried the "Database Search Form", only one homolog was picked up
from PDB. If I align my protein with each homolog by the "DaliLite
Pairwise comparison", how can I combine them together?
Thanks in advance.
Best regards,
Sincerely,
Dalei Wu
Drug Discovery and Design Center
Shanghai Institute of Materia Medica
Shanghai Institutes for Biological Sciences
Chinese Academy of Sciences
555 Zu Chongzhi Road, Shanghai, 201203, China
[EMAIL PROTECTED]
2007-12-05
