Not enough information! Does the XYZIN file exist?
Eleanor
Raja Dey wrote:
Hi All,
I was trying to run NCS Phased refinement in the gui of CCP4
( Refmac_5.2.0005) and getting the following error. I just
pasted below the last part of the log file. Any help is greatly appreciated.
Tarak
ROTATION MATRIX
-0.567 -0.405 0.717
-0.385 -0.639 -0.665
0.728 -0.654 0.206
PATTERSON SPHERICAL POLARS OMEGA PHI CHI OMEGA TO AXIS ZO PHI FROM AXIS XO TO AXIS YO
WHEN BETA=0 CAN ONLY DEFINE ALPHA + GAMMA .
WHEN BETA = 180 CAN ONLY DEFINE GAMMA - ALPHA.
CROWTHER ALPHA BETA GAMMA 137.15697 -78.11038 41.90139
SPHERICAL POLARS OMEGA PHI CHI 39.04911 -42.37222 179.26884
DIRECTION COSINES OF ROTATION AXIS 0.46554 -0.42468 0.77661
Angle between rotation axis and Centroid vector 87.88194
***** Note: Since this angle between rotation axis and Centroid vector is near to 90.0 this may represent a pure rotation ***
LSQKAB: Normal Termination
Times: User: 0.0s System: 0.0s Elapsed: 0:00
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------------- NCS Mask -------------------
unable to open phase file
***************************************************************************
* Information from CCP4Interface script
***************************************************************************
The program run with command: ncsmask XYZIN /home/raja/liang/native/p6522/b-sharpen/b-sharpen_1_12_chainI_pdb.tmp MSKOUT /home/raja/liang/native/p6522/b-sharpen/b-sharpen_1_15_msk.tmp
has failed with error message
child process exited abnormally
***************************************************************************
#CCP4I TERMINATION STATUS 0 "child process exited abnormally"
#CCP4I TERMINATION TIME 07 Dec 2007 16:13:00
#CCP4I MESSAGE Task failed
Raja Dey, Ph.D.
Research Associate
Molecular and Computational Biology
University of Southern California
1050 Childs Way, Los Angeles, CA 90089
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