If you take new dictionary with new refmac it may solve this and some
other naming problems.
Try from the website:
www.ysbl.york.ac.uk/YSBLPrograms/index.jsp
Garib
On 3 Jan 2008, at 16:53, Daouda TRAORE wrote:
Hi all,
I'm trying to refine a protein DNA complex using Refmac.
Unfortunately the job fails because of the definition of nucleosides :
In the pdb file I use for molecular replacement (and it's the same
for all protein-DNA complex I found in the PDB) nucleosides are
labelled DG, DT, DA , DC. In the monomer libraries for Refmac these
are labelled GD, TD, AD, CD.
The jobs fails also if I replace the "DG, DT, DA , DC" by "GD, TD,
AD, CD" in the coordinate file prior to refinement.
Could someone help me.
--
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Daouda A.K. TRAORE, PhD Student
Laboratoire de Cristallographie et Cristallogenèse des Protéines
Institut de Biologie Structurale de Grenoble
41 rue Jules Horowitz
38027 Grenoble Cedex 1 - France
Phone: @IBS: +33 4 38 78 95 96 @ESRF/FIP: +33 4 76 88 27 89
Fax: +33 4 38 78 51 22
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Laboratoire Chimie et Biologie des Metaux
CEA Grenoble iRTSV / LCBM / PMB
17 Avenue des Martyrs
38054 Grenoble Cedex 9 - France
Phone : +33 4 38 78 38 75
Fax : +33 4 38 78 34 62
E-mail: [EMAIL PROTECTED]
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