Hello Everyone,
Just to let you know our lab just starting using the MrBUMP program
(v0.4.1), so our problem(s) could definitely be from lack of knowledge.
Anyway, when we try a FASTA search from CCP4i, either over the internet or
locally, things just seem to hang at "Getting Template Sequences and
Multiple Alignment" . See output from logfile.
Any ideas, directions or suggestions would be greatly appreciated.
Thanks in advance,
Doug
###################################
### Fasta search ###
###################################
Fasta log message: E value used in Fasta search: 2.00e-02
Fasta log message: Performing Fasta search locally
Fasta log message: Fasta DB set to:
/people5/bhaumik/.ccp4_mrbump/pdb_ATOMseqs.txt
Number of templates after user specified chains are included: 169
---------------------------------------
Adding chains from local files...
---------------------------------------
Fasta log message: Number of matches: 170
---------------------------------------------------------
Fasta: Getting Template Sequences and Multiple Alignment:
---------------------------------------------------------
Douglas Bailey Ph: 301-846-5328
NCI-Frederick Fax:
301-846-6322
1050 Boyles Street E-mail: [EMAIL PROTECTED]
Frederick, Maryland 21702
