Is it possible that you have phenix (or some old version of phenix)
installed and that the PATH variable from the CCP4i gui finds that phenix
first?
Check if ccp4_first_in_path is set to 1 in your $CCP4/include/ccp4.setup
script.
Tim
--
Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
On Fri, 1 Feb 2008, C.Ainsley Davis wrote:
Hello all
I've recently redone a computer system using Ubuntu Gutsy Gibbon as the OS.
We've had success using Feisty Fawn in the past and using the ccp4i suite
downloaded from wgscott's page (the debian files used in ubuntu). For
whatever reason we cannot use PHASER in the ccp4i suite. The error we
continuously get is "cannot read .mtz file" FAILURE..etc.
If i use a small script file (for example phaser.sh or phaser.com) with the
following lines
phaser << eof
MODE MR_AUTO
HKLIN "./p3.mtz"
LABIN F=F_1 SIGF=SIGF_1
TITLE MR_01
COMPOSITION PROTEIN MW 13000 NUMBER 1
SGALTERNATIVE ALL
TOPFILES 5
ENSEMBLE ensemble1 &
PDBFILE "x.pdb" &
IDENT 40.0
SEARCH ENSEMBLE ensemble1 &
NUMBER 2
RESOLUTION 4.0 30.0
ROOT p3
end
and it works, but the ccp4i GUI cannot read it in PHASER. It works for REFMAC
when doing refinements.
what the heck!
thanks all
Ainsley Davis
