I want to draw a picture of the contact of a 22-mer peptide with a protein
in a 2-D perspective. Would be basically be what Ligplot does, however I
don`t like the output of this program. I know that using programs like
ChemDraw I can do it manually but decide to see if anyone knew about a
program that could at least project a 3-D pdb file of a peptide into a 2-D
image. As already posted MIFit is an option but it seems that only does it
for individual residues.
Sandra
At 01:15 PM 3/28/2008, you wrote:
just out of curiosity, why ?
A.
On 28 Mar 2008, at 17:15, Sandra Dias wrote:
Does anyone know of a program, different from Ligplot, that can
draw 2D image of peptides out a pdb file? It would be a plus if it
can establish and draw contacts between this peptide and the
neighbors residues.
thanks in advance for any input.
Sandra
