my model has 1600 atoms. the memory allocation for the linux (worked) and OS X (failed) binaries is the same:
Sol_------------------------------------------------ Sol_ - Sol_ --- SFCHECK --- /Vers 7.2.02; 01.10.2006/ - Sol_ Memory: 30 Mb N_atom_max: 50000 - Sol_ - Sol_------------------------------------------------ compiling from source or downloading the mac intel binary worked with no errors. Thanks, Mike On Fri, Apr 4, 2008 at 1:58 AM, Jovine Luca <[EMAIL PROTECTED]> wrote: > On 4 Apr 2008, at 01:36, Michael Giffin wrote: > > > > i get the same error on OS X 10.5.2 and 10.4.11: > > > > > > > sfcheck -f refmac2.mtz -m refmac2.pdb -out y -nomit 2 -map > > > > > > > the error: > > ---------------------------------------------------- > > Open failed: Unit: 11, File: sfcheck_scr.dat (logical: sfcheck_scr.dat) > > <B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN--> > > Last system error message: Bad file descriptor > > CCP4: Open failed: File: sfcheck_scr.dat > > CCP4: Open failed: File: sfcheck_scr.dat > > ---------------------------------------------------- > > > > the binary file sfcheck_scr.dat exists. > > > > > Hi Mike, > > I encountered the same exact issue under OS X not long ago, and it turned > out to be caused by memory/atom limitations of Fink's sfcheck (I assume > that's what you are using?): > > Sol_ --- SFCHECK --- /Vers 7.2.02; 01.10.2006/ - > Sol_ Memory: 30 Mb N_atom_max: 50000 - <= !!! > > so that using the sfcheck binary included with BALBES: > > Sol_ --- SFCHECK --- /Vers 7.02.4; 02.05.2007/ - > Sol_ Memory: 60 Mb N_atom_max: 100000 - > > solved the problem. How many atoms are you playing with? > > HTH, Luca > > ------------------------------------------------ > Luca Jovine, Ph.D. > Karolinska Institutet > Department of Biosciences and Nutrition > Hälsovägen 7, S-141 57 Huddinge, Sweden > Voice: +46.(0)8.6083-301 FAX: +46.(0)8.6089-290 > E-mail: [EMAIL PROTECTED] > W3: http://ki.se > ------------------------------------------------ >
