Hi All, Every time I quit from 'O' (version 11.0.5) my bash terminal
freezes. Otherwise 'O' is working fine. Does anyone have the same experience?
Is there any solution to this? I am using 13" macbook leopard (OSX 10..5) with
intel core 2 duo. I enclosed the text I got on the task window after opening
'O'.
anand2:~ rajadey$ ono
No dials
Mono enabled only
Gamepad disabled
ODAT environment variable :/usr/local/ono/data/
O > O for Mac & Intel processors.
O > Use of this program, implies acceptance of the present
O > set of conditions of use.
O > Contact [EMAIL PROTECTED] if in doubt.
O > O version 11.0.5, Build 070605
O > Define an O file (terminate with blank):
O > Menu names are not defined.
O > Enter file name [/usr/local/ono/data/menu.odb]:
O > menu.odb file for O version 11.0.5, 070605
O > Database compressed.
O > Database compressed.
O > Database compressed.
O > Database compressed.
O > Database compressed.
O > Database compressed.
O > Forsyth & Wells Scattering Factors Acta Cryst 12 (1959) 412-5
O > Startup file was never loaded
O > Enter file name [/usr/local/ono/data/startup.odb]:
O > startup.odb file for O v0 050807
O > Stereochemistry file was never loaded
O > Enter file name [/usr/local/ono/data/stereo_chem.odb]:
O > stereochemistry amino acids and nucleic acids, Date: 030213
O > RNA conformers, 030213
O > HIS C O connection
O > TYR ATOM/fragment_all corrected
O > 021128 Fragment_ALL, modify ATOM records to use \, main-chain RNA fix
O > 021127 Connectivty CONNECT_ALL
O > 021112 PRO changed to be flexible ring pucker, different side-chain
angles
O > 021113 AGCU added 2 'dummy' torsion_flexibles to allow build_res C option
O > 021113 AGCU sugar pucker flexible on advice of Phil Evans, email 010613
O >
O > JCS (20030215)
O > Modified DNA to include connect_all, centre, atom, and modified whole
O > file to use ' instead of * (for CNS output)
O > JCS (20061008)
O > Finally made stereo_chem_gly the default. Has a lot of sugar
information
O > JCS (20071008)
O > This is the CNS/DNA freindly version of stereo_chem.odb and is default
O > for James's custom O database. Here's what it has:
O > 1. DNA is default.
O > 2. Primes (') instead of stars (*) for the sugars in nucleic acid.
O > 3. C5A instead of C7 for the exocyclic methyl in thymidine.
O > 4. James's special torsion definitions for building nucleic acids:
O > chi, chi', alpha, alpha', beta, beta', gamma, gamma',
O > delta, and delta'
O > 5. The Ile delta carbon takes the CNS name (CD) instead of the
O > standard (CD1)
O >
O > read ok
O > No codes checked
O > Connectivity used is : all
O > There were 63 residues.
O > 646 atoms.
O > ODAT in use : /usr/local/ono/data/
O > Number of mouse buttons 3
O > Default fog values have been defined
O > These are in ODB .ogl_light entries 14-16
O > Making visibility data structures.
O > Making visibility data structures.
As4> ......No message from the O administrator........
Heap> dial_speed_sgi.odb - gerard kleywegt @ 940120/940825
Heap>
Heap> toggle between fast dials (e.g., for tor_res) and
Heap> slow dials (e.g., while rotating) on SGIs
Heap>
Heap> type:
Heap> menu @fast_dials on on
Heap> menu @slow_dials on on
Heap> menu @faster on on
Heap> menu @slower on on
Heap>
Heap> Database compressed.
Heap>
Heap> Datablock file read successfully !
Heap>
New> Number of mouse buttons 3
Thanks...
RD
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