1. I was sourcing /sw/bin/init.csh, so that wasn't the problem...but:
2. I did find the problem (at least for the precompiled version from
UC Santa Cruz): For some reason "sudo ccp4i" gave the error message,
but just "ccp4i" (without the sudo) worked OK. (Although I thought
the first time you launched ccp4i you were supposed to do it using
sudo...??). Anyway, I'm good (although peeved at my continuing
inability to master sudo. I miss living on the edge with root).
3. I didn't try to debug the binaries I got from the ccp4 site, since
I now have a working package. However, Iain Kerr kindly provided
this info, which may prove useful to other small brains out there:
ccp4.setup is in ccp4-6.0.2/bin...it used to be in include..is that
your problem ?
Also, there's no ccp4i folder....the ccp4i binary is in bin/ also.
Note to the long-suffering folks at the secret underground world
headquarters of ccp4: Small brain or no, I spent a lot of time
looking around for some clue as to how to complete the install for
the ccp4 package, to no avail; a README file to accompany the
installer would not be unwelcome...
Thanks,
Pat
On 25 Apr 2008, at 4:56 PM, William Scott wrote:
You need to run
source /sw/bin/init.sh
if you use bash or zsh
or
source /sw/bin/init.csh
if you use tcsh.
this will automatically set up the environment variables and then
it will do what you want it to (which is to set up the ccp4
environment according to whichever shell you might be using).
On Apr 25, 2008, at 1:19 PM, Patrick Loll wrote:
Accck!
1. I tried to install Bill Scott's precompiled ccp4 on an intel
mac running OS X 10.5. When attempting launch ccp4i, I receive
this error message:
/sw/share/xtal/ccp4-6.0.2/ccp4i/bin/ccp4i: line 4 /bltwish: no
such file or directory
Typing "which bltwish" returns /sw/bin/bltwish, which jibes with
the definition of $CCP4I_TCLTK, so I'm not sure where the problem
is...
2. Pfui. So next I tried jettisoning the apt-get installation,
and instead used the installer downloaded from the ccp4 site
(ccp4-6.0.2-osx-i386.dmg.gz). This goes swimmingly, until I
actually try to do something. Commands like "ccp4i" or "mtzdump"
aren't recognized, so I go looking for the ccp4.setup file; but
it's not there. Huh? Also, there's no folder named ccp4i, even
though this install is supposed to include it...
It's Friday, and I'm at the nadir of my weekly brain function, so
perhaps some kind soul will tell me where I'm going astray.
Thanks,
Pat
---------------------------------------------------------------------
------------------
Patrick J. Loll, Ph. D.
Professor of Biochemistry & Molecular Biology
Director, Biochemistry Graduate Program
Drexel University College of Medicine
Room 10-102 New College Building
245 N. 15th St., Mailstop 497
Philadelphia, PA 19102-1192 USA
(215) 762-7706
[EMAIL PROTECTED]
------------------------------------------------------------------------
---------------
Patrick J. Loll, Ph. D.
Professor of Biochemistry & Molecular Biology
Director, Biochemistry Graduate Program
Drexel University College of Medicine
Room 10-102 New College Building
245 N. 15th St., Mailstop 497
Philadelphia, PA 19102-1192 USA
(215) 762-7706
[EMAIL PROTECTED]
