Hi I was running phaser on an 8 core Mac pro using the fink 10.5 (intel) ccp4 binaries provided by W.G Scott . Although the many phaser jobs I have run in the last month have successfully phased my data. Today I saw a very strange error and phaser FAILED.
I did rerun phaser and have it work after a slight change in the pdb ( I removed the heteroatoms) , so I dont think there is something wrong with phaser or the pdb. But I thought I would send the error message along in case it is a Mac Pro specific problem that crops ups every now and then. Thanks Hari Jayaram -------------------- EXIT STATUS: FAILURE -------------------- CPU Time: 0 days 0 hrs 8 mins 35.41 secs (515.41 secs) Finished: Thu May 1 14:19:16 2008 </pre> </html> *************************************************************************** * Information from CCP4Interface script *************************************************************************** The program run with command: phaser has failed with error message phaser(88098) malloc: *** mmap(size=1185792000) failed (error code=12) *** error: can't allocate region *** set a breakpoint in malloc_error_break to debug *************************************************************************** #CCP4I TERMINATION STATUS 0 "phaser(88098) malloc: *** mmap(size=1185792000) failed (error code=12) *** error: can't allocate region *** set a breakpoint in malloc_error_break to debug" #CCP4I TERMINATION TIME 01 May 2008 14:19:16 #CCP4I MESSAGE Task failed
