I usually do that with a simple selection. it works in MAIN, CNS, RASMOL.... below syntax for RASMOL (because it comes w/ ccp4) assuming they are superimpsosed, waters have chain names W and X, respectivly, and your cutoff for conservedness(?) is 0.7A:
select (water and *:W) and within(0.7,(water and *:X)) write pdb conserved.pdb On Friday 29 August 2008 01:22:09 Tim Gruene wrote: > Hello, > > I am (lazily ;-)) looking for a program that list all conserved waters > between to structures (after superposition), i.e. all waters between both > structures within a certain distance cut-off. > > Could anyone please point me to a program that does this? > > Thanks a lot, Tim > > -- > Tim Gruene > Institut fuer anorganische Chemie > Tammannstr. 4 > D-37077 Goettingen > > GPG Key ID = A46BEE1A
