If your peptide has less than 400 atoms, you can also try and use the 'Fit
Ligand' option under the "Calculate" menu of the main window: read in the
coordinates of a peptide of the same length as the one you wish and use
"Simple Mutate" from the "Model/Fit/Refine" menu to adjust to the desired
sequence. Then choose "fit ligand" and click "flexible". That often works
amazingly well with decent density.
Tim
--
Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
On Tue, 2 Sep 2008, Tarique wrote:
Hi,
Can any body tell me how to build peptide fragment of 5-6 residues using
coot,if the sequence is known.I am working at 2.1 angstroms resolution map.
Tarique Khan
Research scholar
Structural Bilogy Unit,
National institute of Immunology,
Aruna Asaf Ali marg,
new Delhi 110067
India
Open WebMail Project (http://openwebmail.org)
