The MolProbity server allows you to look at contacts between two interfaces. You will see H-bonds, van der Waals interactions, and steric clashes in a kinemage view, as well as in a text list form if desired.
You can also use our program 'Probe' offline, which may be dowloaded here: http://kinemage.biochem.duke.edu/software/probe.php If you need any help running MolProbity or Probe, please let me know and I'd be happy to help. Thanks, Jeff Headd Richardson Lab Duke University On Thu, Nov 20, 2008 at 5:20 AM, Vellieux Frederic <[EMAIL PROTECTED]> wrote: > Dear Colleagues, > > I am looking for a program (if there is one...) that would allow to list all > interactions at a dimer interface (polar, ie hydrogen bonds and salt > bridges, and non polar). > > Thanks in advance for your replies. > > Best regards, > > Fred. >
