Francis E Reyes wrote: > I think this was posted earlier, but the geometry constraints for the > cartoon mode is a little tight for a residue of my protein. What's the > setting to relax them so it'll draw a continuous tube instead of > leaving it blank? > > Thanks > > FR > > --------------------------------------------- > Francis Reyes M.Sc. > 215 UCB > University of Colorado at Boulder > > gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D > > 8AE2 F2F4 90F7 9640 28BC 686F 78FD 6669 67BA 8D5D >
Do you mean that you want to change the secondary structure assignment? Then the source below could help you. http://pymol.sourceforge.net/newman/user/S0260cartoons.html show cartoon alter 11-40/, ss='H' # assign residues 11-40 as helix alter 40-52/, ss='L' # assign residues 40-52 as loop alter 52-65/, ss='S' # assign residues 52-65 as sheet alter 65-72/, ss='H' # assign residues 65-72 as helix rebuild # regenerate the cartoon Tim -- Tim Schulte Ruhr-Universität Bochum LS Biophysik AG Proteinkristallographie Universitätsstr. 150 44780 Bochum Germany Tel. +49-234-32-25754
