Joe,
UCSF Chimera will allow you to do this if you open your pdb file then
open your ccp4 map and select one of the monomers. This allows you to
display the map only on the selected zone. Next, you just have to open
the map again, which allows you to display the map for the other
monomer and color it differently. The UCSF Chimera program website is
below. If you need any more help don't hesitate to email me.
http://www.cgl.ucsf.edu/chimera/
Cheers,
Dave Chenoweth
**********************************************
David M. Chenoweth
California Institute of Technology
Division of Chemistry and Chemical Engineering
Mail Code: 164-30
1200 California Boulevard, 91125 Pasadena
California, USA
Phone: 626-395-6074
Email: [email protected]
**********************************************
On Apr 19, 2009, at 11:32 AM, JOE wrote:
Thanks a lot for the replies I have received so far!
I have one homodimer in each ASU. What I intended to do is to show
the electron density for each monomer in different colors (only for
presentation purpose). I guess the only way to achieve this is to
individually create (not sure it is a right word) the map for each
monomer and then display them in pymol or coot. Any better solutions?
Thanks,
Joe
On Sun, Apr 19, 2009 at 11:06 AM, JOE CRYSTAL <[email protected]>
wrote:
Hi,
I want to generate maps only covering atoms in the pdb file. I tried
fft-creat map in ccp4i (output map to cover all atoms in pdb), but
it actually also generated map in places other than pdb atoms. Are
there any other ways to do this? Thank you.
--
Best regards,
Joe
--
Best regards,
Joe
