Dear Miri, I cant find the FROFIT you mentioned. sincerly
S.Jayashankar Research Student Institute for Biophysical Chemistry Hannover Medical School Germany. On Tue, Jun 16, 2009 at 8:03 AM, Miri Hirshberg <[email protected]> wrote: > Tue June. 16th 2009 > EBI > > For example, FROFIT, where you can specify the residues involved in the > actal alignment, and the residues to calculate the RMS on > > Miri > > > On Tue, 16 Jun 2009, Jayashankar wrote: > > Dear friends, >> >> Is it possible to allign structure of proteins of same class or family >> just >> based on acive site residues or defined by its volume of cavity with >> preferred deviation. >> >> >> any suggestions could possibly help me. >> >> sincerely >> >> >> S.Jayashankar >> Research Student >> Institute for Biophysical Chemistry >> Hannover Medical School >> Germany. >> >> > -- > > ------------------------------------ > Dr Miri Hirshberg > European Bioinformatics Institute UK > http://www.ebi.ac.uk > > Phone: +44 (0) 1223 492647 > FAX: +44 (0) 1223 494487 > ------------------------------------ >
