PDBeSite was designed for this, see
http://www.ebi.ac.uk/pdbe-site/PDBeSite/
Eugene
On Fri, 10 Jul 2009, Raja Dey wrote:
Hi,
Sorry for asking a non-ccp4 question. Is there any way to mine the PDB to
accumulate the structures which have similar binding site(ligand binding
pocket) with that of a particular structure. If anyone can suggest a program to
do this would be great. I want to do this computationally.
Thanking you in advance...
Raja
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