Hi everyone
Dmmulti seems to not like masks converted in mapman to the CCP4 format.
I get the following error
dmmulti: domnin - Mask file is not logical*1
I know the masks are fine because I can display them fine in coot which
reads CCP4 masks .I can also get ncsmask to read them fine.
Now in ncsmask run if I ask ncsmask to do operations which I have already
done in mama and write out the mask . Now dmmulti does not give me the
logical*1 error.
I am attaching the mapman statistics for the mask which does not work (
mama to ccp4 in mapman) and the working mask ( mama-to-ccp4-then-ncsmask)
here.
They seem very similar so I am wondering why I have to have ncsmask touch my
CCP4 mask file before dmmulti is happy with it.
Thanks for your help
Hari
##############
Not working mask
##############
File name for input map file on unit 1 : nottedmask.msk
file size = 261328 ; logical name
nottedmask.msk
Number of columns, rows, sections ............... 51 29 44
Map mode ........................................ 2
Start and stop points on columns, rows, sections 21 71
-6 22 -227 -184
Grid sampling on x, y, z ........................ 80 103 154
Cell dimensions ................................. 79.81400
102.63900 153.62700 82.46000 75.53000 73.45000
Fast, medium, slow axes ......................... Y X Z
Minimum density ................................. 0.00000
Maximum density ................................. 1.00000
Mean density .................................... 0.19175
Rms deviation from mean density ................. 0.39367
Space-group ..................................... 1
Number of titles ................................ 2
Titles :
Created by MAPMAN V. 080625/7.8.5 at Mon Jul 13 11:27:06 2009 for
hari
Parameters as read from the map file
Origin ...................... -6 21 -227
Extent ...................... 29 51 44
Grid ........................ 80 103 154
Cell axes ................... 79.81 102.64 153.63
Cell angles ................. 82.46 75.53 73.45
UVW (fast, medium, slow) .... Y X Z
Header done
Not in core
Reading levels ...
Level number : ( 10)
Level number : ( 20)
Level number : ( 30)
Level number : ( 40)
Closing BINARY CCP4 map on unit : ( 1)
Map read into memory - calculating statistics
Sum of density in map : ( 1.248E+04)
Requested dynamic range : 0.0000E+00 1.0000E+00
Value of Prod and Plus : 2.5500E+02 0
Actual dynamic range : 0.0000E+00 1.0000E+00
##############
Working mask:
##############
Logical Name: nottedmask_mod1.msk Filename: nottedmask_mod1.msk
<!--SUMMARY_END--></FONT></B>
File name for input map file on unit 1 : nottedmask_mod1.msk
file size = 66180 ; logical name
nottedmask_mod1.msk
Number of columns, rows, sections ............... 44 29 51
Map mode ........................................ 0
Start and stop points on columns, rows, sections -227 -184
-6 22 21 71
Grid sampling on x, y, z ........................ 80 103 154
Cell dimensions ................................. 79.81400
102.63900 153.62700 82.46000 75.53000 73.45000
Fast, medium, slow axes ......................... Z X Y
Space-group ..................................... 1
Number of titles ................................ 1
Titles :
Parameters as read from the map file
Origin ...................... -6 21 -227
Extent ...................... 29 51 44
Grid ........................ 80 103 154
Cell axes ................... 79.81 102.64 153.63
Cell angles ................. 82.46 75.53 73.45
UVW (fast, medium, slow) .... Z X Y
Header done
Closing BINARY CCP4 map on unit : ( 1)
Map read into memory - calculating statistics
Sum of density in map : ( 1.248E+04)
Requested dynamic range : 0.0000E+00 1.0000E+00
Value of Prod and Plus : 2.5500E+02 0
Actual dynamic range : 0.0000E+00 1.0000E+00
