Hi Mohd,
here is how using PHENIX tools:
Step 1:
phenix.pdbtools model.pdb keep=backbone
Step 2:
phenix.pdbtools model_backbone_only.pdb --show-adp-statistics
Please let me know if you have questions about the above tools.
Pavel.
On 9/15/09 9:37 AM, Salameh, Mohd A., Ph.D. wrote:
Dear All,
I would like to prepare a plot showing the b-factor of only the alpha
carbon and/or the backbone atoms and I wonder if somebody knows a
module or software that I can use, I tried the structure
analysis/Temperature factor analysis module in CCP4 but it plots the
average b-factor of all atoms which I'm not interested in. appreciate
your help. Thanks, Mohd
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*Mohd A. Salameh, Ph.D.*
Mayo Clinic Cancer Center
Griffin Cancer Research Building
4500 San Pablo Road
Jacksonville, FL 32224
Tel:(904) 953-0046
Fax:(904) 953-0277
*salameh.m...@mayo.edu*
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