Hi
I've only seen this when people try running Mosflm 7.0.4 (set by the
MOSFLM_EXEC env) with iMosflm 1.0.3. This won't work - there was a bug
that became apparent that could only be fixed by changing both Mosflm
and iMosflm, so if you are running iMosflm 1.0.3, you need to make
sure you are running Mosflm 7.0.5 with it.
This is complicated by the recent CCP4 release (6.1.2) having Mosflm
7.0.4 and iMosflm 1.0.0, and also by the CCP4 set-up process pointing
_whatever_ iMosflm you have on your system to the CCP4 supplied
Mosflm; so if you have installed CCP4 6.1.2, and want to install
iMosflm 1.0.3 "over the top", you have to hack into the CCP4 setup
stuff to make sure you are using the right iMosflm/Mosflm pairing, or
make sure that in your .cshrc/.profile/.bash_profile/.login/.whatever
file, you set up the iMosflm environment after the CCP4 setup.
HTH
On 21 Sep 2009, at 20:23, Murray, Michael (NIH/NIEHS) [F] wrote:
Hello all,
I am attempting to use the iMosflm 1.0.3 GUI with the test dataset
available
from the webpage. I am able to load the dataset without any problems.
However, when I click on Indexing the program displays the error
below.
Clicking OK just results in a spinning E in the upper right hand
corner
while the program says "Finding spots on image hg_084.mar1600" I'm
not sure
what it did with image one. There are no spots selected in the Image
Display.
Looking at the mosflm.lp file it appears that spots were found for
both
image 1 and 84 successfully. Perhaps this is a problem with the GUI
not
updating?
Any help would be appreciated. It's been a while since I played with
iMosflm but this didn't happen when I went through the tutorial with
previous versions.
Regards,
Mike
Michael S. Murray, Ph.D.
National Institute of Environmental Health Sciences
MD E3-01
P.O. Box 12233
Research Triangle Park, NC 27709
Phone: (919) 541-0268
****************************************************************************
syntax error in expression "627.0 * ": premature end of expression
syntax error in expression "627.0 * ": premature end of expression
while executing
"expr $y_pixels * [$::session getParameterValue "yscale"]"
("auto" arm line 23)
invoked from within
"switch -- $a_type {
"auto" {
set type $a_type
set x_mm [lindex $args 4]
set y_mm [lindex $args 5]
if {1 || ([lindex $args 3] == ..."
while constructing object "::Spotlist::spot0"
in ::Spot::constructor
(body line 7)
invoked from within
"Spot \#auto "auto" $image_height $pixel_size $origin $axis_order $x
$y
$intensity $stdev"
(object "::Indexwizard::spotlist0" method
"::Spotlist::readSpotFile"
body line 35)
invoked from within
"readSpotFile [lindex $args 1]"
while constructing object "::Indexwizard::spotlist0" in
::Spotlist::constructor (body line 23)
invoked from within
"Spotlist \#auto "file" $l_image [$l_image makeAuxiliaryFileName "spt"
$::mosflm_directory]"
(object "::.c.body.indexing" method
"::Indexwizard::processSpotfindingResults" body line 55)
invoked from within
"[.c component indexing] processSpotfindingResults $dom"
(object "::Mosflm::m" method "::Mosflm::processMessage" body line
92)
invoked from within
"::Mosflm::m processMessage"
(in namespace inscope "::Mosflm" script line 1)
invoked from within
"namespace inscope ::Mosflm {::Mosflm::m processMessage}"
Harry
--
Dr Harry Powell, MRC Laboratory of Molecular Biology, MRC Centre,
Hills Road, Cambridge, CB2 0QH
