Dear Alena
Windows doesn't like filenames which contain colons ( in this case the
time and date separators in the harvest file name). The solution is to
switch off harvesting ('Do not create harvest file' option in the gui),
or change the harvest dataset name. For a little more detail, please see
the CCP4 Windows problems page
http://www.ccp4.ac.uk/problems/windows.php
(item 2 in the 'General problems with running CCP4 on Windows' section).
Norman
Norman Stein
CCP4
Daresbury Laboratory
Warrington
WA4 4AD
UK
________________________________
From: CCP4 bulletin board [mailto:[email protected]] On Behalf Of
Stsiapanava Alena
Sent: 12 October 2009 11:23
To: [email protected]
Subject: [ccp4bb] Refmac5 open failed
Dear CCP4-Experts,
I'd like to ask you to help me to solve next problem.
When I use Refmac5 (version 5.5.0102, ccp4 6.1 on Windows XP) initially
program runs well but at the end it fails with report:
$TEXT:Result: $$ Final results $$
Initial Final
R factor 0.5280 0.5248
R free 0.5155 0.5152
$$
<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
$TEXT:Warning: $$ comment $$
WARNING: CCPOPN Logical name
F:/DESY23-24.03.09/DepositFiles/unknown/unknown240809:23:17:59.refmac
has no associated file name
$$
<!--SUMMARY_END--></FONT></B>
Open failed: Unit: 9, File:
F:/DESY23-24.03.09/DepositFiles/unknown/unknown240809:23:17:59.refmac
(logical:
F:/DESY23-24.03.09/DepositFiles/unknown/unknown240809:23:17:59.refmac)
<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
Refmac_5.5.0102: Open failed: File:
F:/DESY23-24.03.09/DepositFiles/unknown/unknown240809:23:17:59.refmac
Times: User: 0.0s System: 0.0s Elapsed: 0:06
</pre>
</html>
<!--SUMMARY_END--></FONT></B>
************************************************************************
***
* Information from CCP4Interface script
************************************************************************
***
The program run with command: refmac5 XYZIN
"F:/DESY23-24.03.09/ligand/Molrep/Dha13_ligand_molrep.pdb" XYZOUT
"C:/Ccp4Temp/DhaA13TCP_1_2_pdb_1.tmp" HKLIN
"F:/DESY23-24.03.09/ligand/Molrep/sort_ligand_unique1.mtz" HKLOUT
"C:/Ccp4Temp/DhaA13TCP_1_3_mtz_1.tmp" LIBOUT
"F:/DESY23-24.03.09/DhaA13TCP_1_lib.cif"
has failed with error message
Last system error message: Unknown error
Refmac_5.5.0102: Open failed: File:
F:/DESY23-24.03.09/DepositFiles/unknown/unknown240809:23:17:59.refmac
************************************************************************
***
#CCP4I TERMINATION STATUS 0 Last system error message: Unknown error
Refmac_5.5.0102: Open failed: File:
F:/DESY23-24.03.09/DepositFiles/unknown/unknown240809:23:17:59.refmac
#CCP4I TERMINATION TIME 08 Oct 2009 18:19:35
#CCP4I MESSAGE Task failed
Do you have idea what could be wrong?
Many thanks for any suggestions.
Best regards.
Alena Stsiapanava
--
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