[ccp4bb] run of Refmac5 (latest version of CCP4)

[Vellieux Frederic]

Dear all,

I have a structure (2.25 A resolution) that was refined with CNS and I'm 
trying to see if I can improve it ever so slightly using Refmac5.

The structure has 31408 atoms in the asymmetric unit.

The run of Refmac ends with the following lines:

WARNING : link:SS       is found dist =     2.063 ideal_dist=     2.031
          ch:LL res:3872  CYS      at:SG  .->LL res:3873  CYS      
at:SG  .
INFO:     link is found (not be used) dist=   2.142 ideal_dist=   1.990
          ch:LL res:3813  ASP      at:OD2 .->ch:Nv res:3995  ZN       
at:ZN  .
INFO:     link is found (not be used) dist=   2.188 ideal_dist=   1.990
          ch:LL res:3846  GLU      at:OE2 .->ch:Nv res:3995  ZN       
at:ZN  .
INFO:     link is found (not be used) dist=   2.317 ideal_dist=   2.070
          ch:LL res:3947  HIS      at:NE2 .->ch:Nv res:3995  ZN       
at:ZN  .
INFO:     link is found (not be used) dist=   2.259 ideal_dist=   2.070
          ch:LL res:3702  HIS      at:NE2 .->ch:Nw res:3996  ZN       
at:ZN  .
INFO:     link is found (not be used) dist=   2.180 ideal_dist=   1.990
          ch:LL res:3813  ASP      at:OD1 .->ch:Nw res:3996  ZN       
at:ZN  .
INFO:     link is found (not be used) dist=   2.177 ideal_dist=   1.990
          ch:LL res:3868  ASP      at:OD1 .->ch:Nw res:3996  ZN       
at:ZN  .
<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
Refmac_5.1.24:   No match for full atom ID - subtract one character
Times: User:      47.5s System:    0.1s Elapsed:    0:48
</pre>
<!--SUMMARY_END--></FONT></B>
<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
</html>
<!--SUMMARY_END--></FONT></B>

It ends without creating an output PDB file. I can't see one in the 
working directory. The last sentence is very cryptic to me (No match for 
full atom ID - subtract one character).

Any idea?

Thank you in advance,

Fred.
<<attachment: Frederic_Vellieux.vcf>>