I have a 10-residue stretch of a protein that adopts an interesting
conformation; I'd like to know if this conformation occurs in other
proteins. I'd welcome suggestions for tools that will allow me to to
search for this peptide conformation in the PDB.
I naturally thought of DALI, but it seems to require a minimum length
of 30 residues.
Thanks,
Pat
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Patrick J. Loll, Ph. D.
Professor of Biochemistry & Molecular Biology
Director, Biochemistry Graduate Program
Drexel University College of Medicine
Room 10-102 New College Building
245 N. 15th St., Mailstop 497
Philadelphia, PA 19102-1192 USA
(215) 762-7706
pat.l...@drexelmed.edu
