Hi everyone, I am currently in the process of solving some antigen-antibody complex structures. I was wondering if people here have used Modeller and Rosetta for homology modeling and have any recommendations.I would like to build the model of the antigen/antibody to the known structure of the antibody/antigen ( to get a model of the complex while my crystallization/structure solving process continues).I have experience in Modller but I have not tried Rosetta or the newer PyRosetta (which looks interesting). In the event of docking a protein to another are there any great programs that people here have used/recommend?
I would really appreciate your suggestions/insights. Subhendu UCSF
