I have seen this when expressing sub-domains of a larger protein.
Adding some (about 0.5% w/v) BOG (beta octylglucoside) worked well for cases similar to what you've described.

Cheers,
Quyen

_______________________________
Quyen Hoang, Ph.D
Department of Biochemistry and Molecular Biology,
Stark Neurosciences Research Institute
Indiana University School of Medicine
635 Barnhill Drive, Room MS0013D
Indianapolis, Indiana 46202-5122

Phone: 317-274-4371
Fax: 317-274-4686
email: [email protected]

On Jan 8, 2010, at 7:41 AM, Sivaraman Padavattan wrote:

Dear all,
I am trying to express the human protein using bacterial expression strain (Rosetta) and purified using Ni-NTA affinity purification. The Molecular weight of out protein is 47 kDa. In SDS-PAGE, we have seen that 27 kDa contaminant protein co-eluted with our protein even at high concentration of Imidazole. In Superose 12 column, these two proteins eluted as a single peak and its corresponding molecular weight suggestive of partial interaction. By mass mapping we have found 27 kDa band is an adenylate kinase. Is there any specific way to separate adenylate kinase from our protein?
Thanks in advance,

Sivaraman Padavattan




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