Hello Jane,
if I remember correctly, rasmol uses the dssp algorithm for the secondary
structure assignment. You can also use pymol or molscript (molauto) for
the same task. In any case you should always check the boundaries of the
secondary structure elements manually because no program is perfect ;-)
Tim
--
Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
On Thu, 14 Jan 2010, Jane Bailey wrote:
Hello all,
I am sorry for this off-topic question. I see it has been discussed many
times, but somehow I got stuck in the very beginning.
I want to assign ss to my pdb file in DSSP, but I could not find a server to
run it. Does anybody know a webserver where I could run this kind of tasks? I
use iMAC.
Many thanks!
Jane
