Hi Paula,
did you check if Coot/bin is in the PATH variable when you start ccp4i?
Maybe the coot executable you run is a wrapper that sets the path which is
not done as you start ccp4i.
Try to type 'findwaters' from the same terminal you start ccp4i from. Does
that yield a 'command not found'?
Tim
--
Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
On Tue, 19 Jan 2010, Paula Salgado wrote:
Hi everyone
I just downloaded and installed the newest ccp4i release, including Coot
0.6.0. It all seemed fine, except when I try to run refmac from ccp4i,
using the "Run Coot:findwaters", process fails with error message;
**************************************************************************
The program run with command: findwaters --pdbin
"/tmp/psalgado/test_pdb_1.tmp" --hklin "/tmp/psalgado/test_mtz_1.tmp" --f
DELFWT --phi PHDELWT --pdbout "/tmp/psalgado/test_1.tmp" --sigma 2.0
has failed with error message
couldn't execute "findwaters": no such file or directory
***************************************************************************
#CCP4I TERMINATION STATUS 0 "couldn't execute "findwaters": no such file
or directory"
#CCP4I TERMINATION TIME 19 Jan 2010 12:39:26
#CCP4I MESSAGE Task failed
I checked and the Coot/bin directory exists and it contains a
"findwaters" executable file.
I should add that doing "find waters" within Coot works fine.
Any ideas? All help welcomed.
Thanks!
Paula
=========================================================
Dr Paula Salgado
Division of Molecular Biosciences
Department of Life Sciences
Faculty of Natural Sciences
Biochemistry Building, 5th Floor
Imperial College London
South Kensington Campus
SW7 2AZ
London
Tel: 02075945464
Fax: +44 (0)20 7594 3057
