Dear Jon --

it looks to me that it is trying to open a file that does not exist because of the path name... I'm not an expert in MolRep, but you defined PATH_SCR and PATH_OUT with the same names; the problem might then be that it tried to open a file located in the PATH_SCR/ PATH_OUT... (or the opposite). Perhaps if you try the following it could work:

/usr/local/ccp4-6.1.0/ccp4-6.1.0/bin/molrep PATH_SCR "/home/caruthej/ bo3/ccp4/" PATH_OUT "bo3P1_11_molrep_" HKLIN "/home/caruthej/bo3/P1/ ccp4/merged.mtz" MODEL "/home/caruthej/bo3/P1/cns/model.pdb"

Sorry if it doesn't help.

Kind regards.

-- Leo --

On 27 Feb 2010, at 04:31, Jonathan Marvin Caruthers wrote:

The program run with command: /usr/local/ccp4-6.1.0/ccp4-6.1.0/bin/ molrep PATH_SCR "/home/caruthej/bo3/ccp4/bo3P1_11_molrep_" PATH_OUT "/home/caruthej/bo3/ccp4/bo3P1_11_molrep_" HKLIN "/home/caruthej/ bo3/P1/ccp4/merged.mtz" MODEL "/home/caruthej/bo3/P1/cns/model.pdb"

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Chavas Leonard, Ph.D.
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Tel: +81(0)29-864-5642 (4901)
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