Hi Francois,

a non-ccp4 tool:

if you have PHENIX installed then:

iotbx.pdb.box_around_molecule model.pdb

will do it (if I correctly understood you question).

You can also specify a buffer region around a molecule:

iotbx.pdb.box_around_molecule model.pdb --buffer-layer=5

Pavel.


On 3/24/10 12:18 AM, Francois Berenger wrote:
Hello,

Is there a ccp4 tool to find automatically the smallest virtual
orthogonal "box" that contain a given PDB ?

Even if your favorite tool is not part of ccp4, I would be happy
to know about it. ;)

Thanks,
Francois.

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