Mon., April 5th 2010 EBI several options with no need for extra software:
(1) goto http://www.ebi.ac.uk/pdbe/ left handside under "Get PDB by ID" enter a pdb idcode for example 1mh1 you get http://www.ebi.ac.uk/pdbe-srv/view/entry/1mh1/summary goto Structure primary and click Fasta cut and paste the sequence (2) pickup the file, it contains all fasta sequences ftp://ftp.ebi.ac.uk/pub/databases/rcsb/pdb-remediated/derived_data/pdb_seqres.txt (3) or pickup this file which is a better format of JUST proteins ftp://ftp.ebi.ac.uk/pub/databases/msd/pdb_aa.fasta (all peptide sequences in released PDB) Miri PDBe EBI
Is there software that will extract a protein sequence in either 3 letter or single letter code from a given pdb file? Rex Palmer Birkbeck College
On Sun, 4 Apr 2010, Rex Palmer wrote:
Is there software that will extract a protein sequence in either 3 letter or single letter code from a given pdb file? Rex Palmer Birkbeck College
