Hi Bashir, In Pymol: 1. Show-------Surface (will generate surface around the protein) 2. Setting-----Surface-------Cavities & Pockets Only. (will show only Cavities inside) 3. Use cavity_cull command to set the filter for cavities. (eg. set cavity_cull, 40)
Manish -- Manish Chandra Pathak, Ph.D. Department of Biochemistry Emory University School of Medicine 1510 Clifton Road, NE, Room G235 Atlanta, GA 30322 USA Tel: +1-404-727-2563 Fax: +1-404-727-2738 ----- Original Message ---- > From: Muhammed bashir Khan <[email protected]> > To: [email protected] > Sent: Wed, April 7, 2010 9:58:20 AM > Subject: [ccp4bb] Solvent accessible regions of the channel (Pore) > > Dear all; Can anybody help me how I can make the solvent accessible > surface(inside) of the channel(pore)by pymol, or by any other > programme. Thanks in Advance -- Muhammad Bashir > Khan Department for Biomolecular Structural Chemistry Max F. Perutz > Laboratories University of Vienna Campus Vienna Biocenter 5 A-1030 > Vienna Austria Phone: +43(1)427752224 Fax: +43(1)42779522
