Hussain, You can do a couple things.
(1) At the PyMOL command line type: as sticks, organic (2) Create an organic selection using the mouse via the object menu, A > Generate > Selection > Organic. PyMOL makes a new selection for you (if there is at least one organic small molecule). Then, from the new selection select S > As > Sticks. By the way, "A > Generate > Selection" means select "A" for your protein of choice, then from that menu select "Generate" then "Selection", ... and so on. Hope this helps, -- Jason On Mon, Apr 12, 2010 at 2:15 PM, Hussain Bhukyagps <hsn...@yahoo.com> wrote: > Dear all > i'm trying to show ligand which is in the pdb of my protein as sticks, but > it is showing the folowing message in the pymol Tcl/Tk GUI. > > You clicked /1204//X/TL1`0/C10 > Selector: selection "sele" defined with 45 atoms. > > but it not responding to that command. > can any one help..?? > > > > thank you. > > Send free SMS to your Friends on Mobile from your Yahoo! Messenger. > Download Now! http://messenger.yahoo.com/download.php -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120
