On Fri, Apr 23, 2010 at 07:20:15AM -0700, Nathaniel Echols wrote: > On Fri, Apr 23, 2010 at 4:12 AM, Tim Gruene <[email protected]> wrote: > > > we are using the latex phenix version (1.6.1) on PCs with Debain Stable or > > Testing. After starting a refinement job, the following error message shows > > up: > > > > Tim: please report these errors to either [email protected], or the > phenixbb. Most of the Phenix developers don't read CCP4BB and I'm trying to > avoid filling it with Phenix-related chatter. So be it. > > > > File > > "/xtal/Suites/64bit/phenix-1.6.1-357/build/intel-linux-2.6-x86_64/base/lib/python2.6/copy_reg.py", > > line 84, in _reduce_ex > > dict = getstate() > > TypeError: 'NoneType' object is not callable > > <------------ snap >8 > > > > Does anyone know what the error messages mean and how we can overcome them? > > > > No, it is one of the less well-thought-out features of Python which I made > the mistake of using, and it is extremely difficult to debug. The problem > is some sort of corruption in the project database, but it isn't clear how > it happens or how to fix it. Did you try closing and restarting the GUI? > Also, this error apparently only happens when there is an error in the > refinement. Unfortunately, the original message is being suppressed by this > one. The next nightly build should report the original error; I would > recommend downloading that and trying it. (Hopefully tomorrow, but some > unrelated problems are preventing us from releasing any installers right > now.) > > You can also try running the same refinement from the command line - it will > almost certainly fail, but it will at least tell you what to fix in your > inputs (or what to report as a bug - could be either). >
We are going to try the nightly build and also the command line. I'll post the results to the bugs-address. Thanks for the recmmendations. Tim > thanks, > Nat -- -- Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A
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